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1

Improving predicted protein loop structure ranking using a Pareto-optimality consensus method

Yaohang Li, Ionel Rata, See-wing Chiu, Eric Jakobsson

Journal:

BMC Structural Biology

Year:

2010

Language:

english

File:

PDF, 2.70 MB

english, 2010

2

Simulation of Ion Conduction in α-Hemolysin Nanopores with Covalently Attached β-Cyclodextrin Based on Boltzmann Transport Monte Carlo Model

Toghraee, Reza, Lee, Kyu-Il, Papke, David, Chiu, See-Wing, Jakobsson, Eric, Ravaioli, Umberto

Journal:

Journal of Computational and Theoretical Nanoscience

Year:

2010

Language:

english

File:

PDF, 19.64 MB

english, 2010

3

A Coarse-Grained Model Based on Morse Potential for Water and n -Alkanes

Chiu, See-Wing, Scott, H. Larry, Jakobsson, Eric

Journal:

Journal of Chemical Theory and Computation

Year:

2010

Language:

english

File:

PDF, 400 KB

english, 2010

4

A Coarse-Grained Model Based on Morse Potential for Water and N-Alkanes

Chiu, See-Wing, Scott, H. Larry, Jakobsson, Eric

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 51 KB

english, 2010

5

Experimental and theoretical studies of isomeric C2H5S and C2H5S+

Z.-X. Ma, C.-L. Liao, H.-M. Yin, C.Y. Ng, See-Wing Chiu, Ngai Ling Ma, Wai-Kee Li

Journal:

Chemical Physics Letters

Year:

1993

Language:

english

File:

PDF, 515 KB

english, 1993

6

Mindo/3 study of the addition of hydrogen to vinylidene

See-Wing Chiu, Wai-Kee Li

Journal:

Journal of Molecular Structure

Year:

1980

Language:

english

File:

PDF, 493 KB

english, 1980

7

Semi-empirical molecular orbital conformational study of benzannelated cyclooctatetraenes and related compounds, and x-ray crystal structure of benzocyclooctatetraene

Wai-Kee Li, See-Wing Chiu, Thomas C.W. Mak, Nai Zheng Huang

Journal:

Journal of Molecular Structure

Year:

1983

Language:

english

File:

PDF, 453 KB

english, 1983

8

Application of three-center-four-electron bonding for structural and stability predictions of main group hypervalent molecules: the fulfillment of octet shell rule

Yu-San Cheung, Cheuk-Yiu Ng, See-Wing Chiu, Wai-Kee Li

Journal:

Journal of Molecular Structure: THEOCHEM

Year:

2003

Language:

english

File:

PDF, 178 KB

english, 2003

9

Conjugated double bonds in lipid bilayers: A molecular dynamics simulation study

Guijun Zhao, P.V. Subbaiah, See-Wing Chiu, Eric Jakobsson, H.L. Scott

Journal:

Chemistry and Physics of Lipids

Year:

2011

Language:

english

File:

PDF, 872 KB

english, 2011

10

Molecular dynamic simulation study of cholesterol and conjugated double bonds in lipid bilayers

Guijun Zhao, P.V. Subbaiah, Evan Mintzer, See-Wing Chiu, Eric Jakobsson, H.L. Scott

Journal:

Chemistry and Physics of Lipids

Year:

2011

Language:

english

File:

PDF, 691 KB

english, 2011

11

The Effect of Curcumin on the Stability of Aβ Dimers

Zhao, Li Na, Chiu, See-Wing, Benoit, Jérôme, Chew, Lock Yue, Mu, Yuguang

Journal:

Journal of Physical Chemistry B

Year:

2012

Language:

english

File:

PDF, 2.92 MB

english, 2012

12

Semi-empirical molecular orbital conformational study of benzannelated cyclooctatetraenes and related compounds, and x-ray crystal structure of benzocyclooctatetraene

Li Wai-kee, Chiu See-wing, Thomas C.W. Mak, Zheng Huang Nai

Journal:

Journal of Molecular Structure: THEOCHEM

Year:

1983

Language:

english

File:

PDF, 421 KB

english, 1983

13

A modified Morse Potential for Coarse Grained Water-Alkane Interaction

Chiu, See-Wing, Jakobsson, Eric

Journal:

Biophysical Journal

Year:

2011

Language:

english

File:

PDF, 38 KB

english, 2011

14

Coarse Grained Ion-Ion and Ion-Water Interactions

Chiu, See-Wing, Jakobsson, Eric

Journal:

Biophysical Journal

Year:

2012

Language:

english

File:

PDF, 61 KB

english, 2012

15

Simulation Study of a Gramicidin/Lipid Bilayer System in Excess Water and Lipid. I. Structure of the Molecular Complex

Chiu, See-Wing, Subramaniam, Shankar, Jakobsson, Eric

Journal:

Biophysical Journal

Year:

1999

Language:

english

File:

PDF, 460 KB

english, 1999

16

Simulation Study of a Gramicidin/Lipid Bilayer System in Excess Water and Lipid. II. Rates and Mechanisms of Water Transport

Chiu, See-Wing, Subramaniam, Shankar, Jakobsson, Eric

Journal:

Biophysical Journal

Year:

1999

Language:

english

File:

PDF, 381 KB

english, 1999

17

The Influence of Amino Acid Protonation States on Molecular Dynamics Simulations of the Bacterial Porin OmpF

Varma, Sameer, Chiu, See-Wing, Jakobsson, Eric

Journal:

Biophysical Journal

Year:

2006

Language:

english

File:

PDF, 580 KB

english, 2006

18

Cholesterol Surrogates: A Comparison of Cholesterol and 16:0 Ceramide in POPC Bilayers

Pandit, Sagar A., Chiu, See-Wing, Jakobsson, Eric, Grama, Ananth, Scott, H.L.

Journal:

Biophysical Journal

Year:

2007

Language:

english

File:

PDF, 158 KB

english, 2007

19

Collective motion artifacts arising in long-duration molecular dynamics simulations

See-Wing Chiu, Michael Clark, Shankar Subramaniam, Eric Jakobsson

Journal:

Journal of Computational Chemistry

Year:

2000

Language:

english

File:

PDF, 237 KB

english, 2000

20

An Improved United Atom Force Field for Simulation of Mixed Lipid Bilayers

Chiu, See-Wing, Pandit, Sagar A., Scott, H. L., Jakobsson, Eric

Journal:

Journal of Physical Chemistry B

Year:

2009

Language:

english

File:

PDF, 286 KB

english, 2009

21

Impact of sterol tilt on membrane bending rigidity in cholesterol and 7DHC-containing DMPC membranes

Khelashvili, George, Rappolt, Michael, Chiu, See-Wing, Pabst, Georg, Harries, Daniel

Journal:

Year:

2011

Language:

english

File:

PDF, 528 KB

english, 2011

22

Cholesterol Packing around Lipids with Saturated and Unsaturated Chains: A Simulation Study

Pandit, Sagar A., Chiu, See-Wing, Jakobsson, Eric, Grama, Ananth, Scott, H. L.

Journal:

Year:

2008

Language:

english

File:

PDF, 255 KB

english, 2008

23

Optimization of a Coarse-Grained Force Field for Biological Simulations

Fogarty, Joseph, Chiu, See-Wing, Jakobsson, Eric, Pandit, Sagar

Journal:

Biophysical Journal

Year:

2013

Language:

english

File:

PDF, 34 KB

english, 2013

24

Improved Coarse Grained Force-Field Parameters for Biomembranes

Chiu, See-Wing, Jakobsson, Eric, Scott, H. Larry

Journal:

Biophysical Journal

Year:

2009

Language:

english

File:

PDF, 35 KB

english, 2009

25

Impact of Sterol Tilt on Membrane Bending Rigidity in Cholesterol and 7DHC-Containing DMPC Membrane

Khelashvili, George, Rappolt, Michael, Chiu, See-Wing, Pabst, Georg, Harries, Daniel

Journal:

Biophysical Journal

Year:

2012

Language:

english

File:

PDF, 95 KB

english, 2012

26

Optimization of Coarse-Grained Water-Ion Interaction Parameters for Biological Simulation

Fogarty, Joseph, Chiu, See-Wing, Jakobsson, Eric, Pandit, Sagar

Journal:

Biophysical Journal

Year:

2014

Language:

english

File:

PDF, 40 KB

english, 2014

27

G3(MP2) Study of the C 3 H 6 O +• Isomers Fragmented from 1,4-Dioxane +•

Lam, Chow-Shing, Li, Wai-Kee, Chiu, See-Wing

Journal:

Journal of Physical Chemistry A

Year:

2005

Language:

english

File:

PDF, 298 KB

english, 2005

28

Automated Optimization of Water–Water Interaction Parameters for a Coarse-Grained Model

Fogarty, Joseph C., Chiu, See-Wing, Kirby, Peter, Jakobsson, Eric, Pandit, Sagar A.

Journal:

Journal of Physical Chemistry B

Year:

2014

Language:

english

File:

PDF, 995 KB

english, 2014

29

Combining Theory with Experiment: Assessment of the Thermochemistry of SFn, SFn+, and SFn-, n = 1-6

Cheung, Y.-S., Chen, Y.-J., Ng, C. Y., Chiu, See-Wing, Li, Wai-Kee

Journal:

Journal of the American Chemical Society

Year:

1995

Language:

english

File:

PDF, 1.14 MB

english, 1995

30

Amyloid β Peptides Aggregation in a Mixed Membrane Bilayer: A Molecular Dynamics Study

Zhao, Li Na, Chiu, See-Wing, Benoit, Jérôme, Chew, Lock Yue, Mu, Yuguang

Journal:

Journal of Physical Chemistry B

Year:

2011

Language:

english

File:

PDF, 5.81 MB

english, 2011

31

Comment on ‘‘Two isomers of SF●5 and SF+5: Structures and energetics’’ [J. Chem. Phys. 100, 1759 (1994)]

Cheung, Yu-San, Li, Wai-Kee, Chiu, See-Wing, Ng, C. Y.

Journal:

The Journal of Chemical Physics

Year:

1994

Language:

english

File:

PDF, 418 KB

english, 1994

32

Adiabatic ionization energy of CH3SSCH3

Li, Wai-Kee, Chiu, See-Wing, Ma, Z.-X., Liao, C.-L., Ng, C. Y.

Journal:

The Journal of Chemical Physics

Year:

1993

Language:

english

File:

PDF, 591 KB

english, 1993

33

A Gaussian-2 ab initio study of CH2SH, CH2S−, CH3S−, CH2SH−, CH3SH−, CH3+, and CH3SH+

Chiu, See-Wing, Li, Wai-Kee, Tzeng, Wen-Bih, Ng, Cheuk-Yiu

Journal:

The Journal of Chemical Physics

Year:

1992

Language:

english

File:

PDF, 1.18 MB

english, 1992

34

193 nm laser photofragmentation time-of-flight mass spectrometric study of HSCH2CH2SH

Zhao, H.-Q., Cheung, Y.-S., Liao, C.-X., Ng, C. Y., Li, Wai-Kee, Chiu, See-Wing

Journal:

The Journal of Chemical Physics

Year:

1996

Language:

english

File:

PDF, 424 KB

english, 1996

35

Effects of Lithium and Other Monovalent Ions on Palmitoyl Oleoyl Phosphatidylcholine Bilayer

Kruczek, James, Chiu, See-Wing, Jakobsson, Eric, Pandit, Sagar A.

Journal:

Year:

2017

Language:

english

File:

PDF, 918 KB

english, 2017

36

Unique Modification of Membrane Structure by Lithium: A Molecular Dynamics Study

Kruczek, James, Chiu, See-Wing, Jakobsson, Eric, Pandit, Sagar A.

Journal:

Biophysical Journal

Year:

2017

Language:

english

File:

PDF, 42 KB

english, 2017

37

Towards a Unified Understanding of Lithium Action in Basic Biology and its Significance for Applied Biology

Jakobsson, Eric, Argüello-Miranda, Orlando, Chiu, See-Wing, Fazal, Zeeshan, Kruczek, James, Nunez-Corrales, Santiago, Pandit, Sagar, Pritchet, Laura

Journal:

Journal of Membrane Biology

Year:

2017

Language:

english

File:

PDF, 1.92 MB

english, 2017

38

Interactions of Mono and Di–valent cations at Palmitoyl-Oleoyl-Phosphatidylcholine Interface

Kruczek, James, Chiu, See-Wing, Varma, Sameer, Jakobsson, Eric, Pandit, Sagar

Journal:

Year:

2019

Language:

english

File:

PDF, 1.44 MB

english, 2019